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Feature/conf in one place

Ondřej Vašíček requested to merge feature/confInOnePlace into dev
  • added a ./conf directory and a ./conf_example directory
    • the ./conf directory is where users place all their custom configuration files
    • both the build script and the run script will then load the configuration from the ./conf directory and copy it into appropriate places
    • see the ./conf_example to learn what configuration files to place in the ./conf dir
  • reworked scripts to used shared resources
  • moved the jetty distribution into the ./lib directory and then use jetty base in ./sparql_triplestore
  • changed built in tool loading to be loaded the same way as custom tools
  • changed powershell exec in the analysis adapter to print exceptions properly
  • changed linux exec so that the script contains a /bin/bash -c "$1" and the string to execute gets passed as the $1 to the script

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